affycoretools

Functions useful for those doing repetitive analyses with Affymetrix GeneChips.

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author	James W. MacDonald
Maintainer	James W. MacDonald

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affycoretools")

affycoretools Overview	PDF	R Script
affycoretools biomaRt Integration	PDF	R Script
Reference Manual

biocViews	ReportWriting , Microarray , OneChannel , GeneExpression
Depends	affy , Biobase , GO.db , KEGG.db
Imports	biomaRt , limma , GOstats , annotate , annaffy , genefilter , gcrma , splines , xtable , AnnotationDbi
Suggests	affydata , hgfocuscdf , rgl
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me	Agi4x44PreProcess , AgiMicroRna