affycoretools

Functions useful for those doing repetitive analyses with Affymetrix GeneChips.

Bioconductor version: Release (2.14)

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("affycoretools")

Citation (from within R, enter citation("affycoretools")):

Documentation

PDF R Script affycoretools biomaRt Integration
PDF R Script affycoretools Overview
PDF   Reference Manual

Details

biocViews GeneExpression, Microarray, OneChannel, ReportWriting, Software
Version 1.36.1
In Bioconductor since BioC 1.8 (R-2.3)
License Artistic-2.0
Depends affy, Biobase, GO.db
Imports biomaRt, limma, GOstats, annotate, annaffy, genefilter, gcrma, splines, xtable, AnnotationDbi, lattice, gplots, R2HTML, oligoClasses, ReportingTools, hwriter
Suggests affydata, hgfocuscdf, rgl, BiocStyle, knitr
System Requirements
URL
Depends On Me AgiMicroRna
Imports Me
Suggests Me

Package Downloads

Package Source affycoretools_1.36.1.tar.gz
Windows Binary affycoretools_1.36.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) affycoretools_1.36.1.tgz
Mac OS X 10.9 (Mavericks) affycoretools_1.36.1.tgz
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