To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ampliQueso")

In most cases, you don't need to download the package archive at all.

ampliQueso

Analysis of amplicon enrichment panels

Bioconductor version: Release (3.0)

The package provides tools and reports for the analysis of amplicon sequencing panels, such as AmpliSeq

Author: Alicja Szabelska <alicja.szabelska at up.poznan.pl>; Marek Wiewiorka <marek.wiewiorka at gmail.com>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

Citation (from within R, enter citation("ampliQueso")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ampliQueso")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ampliQueso")

 

PDF R Script ampliQueso primer
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, ReportWriting, Sequencing, Software, Transcription, Visualization
Version 1.4.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-2
Depends R (>= 2.15.0), rnaSeqMap(>= 2.17.1), knitr, rgl, ggplot2, gplots, parallel, doParallel, foreach, VariantAnnotation, genefilter, statmod, xtable
Imports edgeR, DESeq, samr
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System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ampliQueso_1.4.0.tar.gz
Windows Binary ampliQueso_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ampliQueso_1.4.0.tgz
Mac OS X 10.9 (Mavericks) ampliQueso_1.4.0.tgz
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