To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("arrayQuality")

In most cases, you don't need to download the package archive at all.

arrayQuality

Assessing array quality on spotted arrays

Bioconductor version: Release (2.14)

Functions for performing print-run and array level quality assessment.

Author: Agnes Paquet and Jean Yee Hwa Yang <yeehwa at stat.berkeley.edu>

Maintainer: Agnes Paquet <paquetagnes at yahoo.com>

Citation (from within R, enter citation("arrayQuality")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("arrayQuality")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("arrayQuality")

 

HTML arrayQuality User Manual
HTML arrayQuality User's guide
HTML customQuality
HTML print-run qc
PDF   Reference Manual

Details

biocViews Microarray, QualityControl, Software, TwoChannel, Visualization
Version 1.42.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License LGPL
Depends R (>= 2.2.0)
Imports graphics, grDevices, grid, gridBase, hexbin, limma, marray, methods, RColorBrewer, stats, utils
Suggests mclust, MEEBOdata, HEEBOdata
System Requirements
URL http://arrays.ucsf.edu/
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source arrayQuality_1.42.0.tar.gz
Windows Binary arrayQuality_1.42.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) arrayQuality_1.42.0.tgz
Mac OS X 10.9 (Mavericks) arrayQuality_1.42.0.tgz
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