To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("arrayQualityMetrics")

In most cases, you don't need to download the package archive at all.

arrayQualityMetrics

 

Quality metrics report for microarray data sets

Bioconductor version: Release (3.1)

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Audrey Kauffmann <akauffmann.bioinfo at gmail.com>

Citation (from within R, enter citation("arrayQualityMetrics")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("arrayQualityMetrics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("arrayQualityMetrics")

 

PDF R Script Advanced topics: Customizing arrayQualityMetrics reports and programmatic processing of the output
PDF R Script Introduction: microarray quality assessment with arrayQualityMetrics
PDF   Reference Manual
Text   NEWS

Details

biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel
Version 3.24.0
In Bioconductor since BioC 2.1 (R-2.6) (8 years)
License LGPL (>= 2)
Depends
Imports affy, affyPLM(>= 1.27.3), beadarray, Biobase, Cairo (>= 1.4-6), genefilter, graphics, grDevices, grid, gridSVG (>= 1.4-3), Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats, SVGAnnotation (>= 0.9-0), utils, vsn(>= 3.23.3), XML
LinkingTo
Suggests ALLMLL, CCl4, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source arrayQualityMetrics_3.24.0.tar.gz
Windows Binary arrayQualityMetrics_3.24.0.zip
Mac OS X 10.6 (Snow Leopard) arrayQualityMetrics_3.24.0.tgz
Mac OS X 10.9 (Mavericks) arrayQualityMetrics_3.24.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/arrayQualityMetrics/tree/release-3.1
Package Short Url http://bioconductor.org/packages/arrayQualityMetrics/
Package Downloads Report Download Stats

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