To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("arrayQualityMetrics")

In most cases, you don't need to download the package archive at all.

arrayQualityMetrics

DOI: 10.18129/B9.bioc.arrayQualityMetrics    

Quality metrics report for microarray data sets

Bioconductor version: Release (3.6)

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Mike Smith <mike.smith at embl.de>

Citation (from within R, enter citation("arrayQualityMetrics")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("arrayQualityMetrics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("arrayQualityMetrics")

 

PDF R Script Advanced topics: Customizing arrayQualityMetrics reports and programmatic processing of the output
PDF R Script Introduction: microarray quality assessment with arrayQualityMetrics
PDF   Reference Manual
Text   NEWS

Details

biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel
Version 3.34.0
In Bioconductor since BioC 2.1 (R-2.6) (10 years)
License LGPL (>= 2)
Depends
Imports affy, affyPLM(>= 1.27.3), beadarray, Biobase, Cairo (>= 1.4-6), genefilter, graphics, grDevices, grid, gridSVG (>= 1.4-3), Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats, utils, vsn(>= 3.23.3), XML
LinkingTo
Suggests ALLMLL, CCl4, BiocStyle, knitr
SystemRequirements
Enhances
URL
BugReports https://github.com/grimbough/arrayQualityMetrics/issues
Depends On Me
Imports Me EGAD
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package arrayQualityMetrics_3.34.0.tar.gz
Windows Binary arrayQualityMetrics_3.34.0.zip
Mac OS X 10.11 (El Capitan) arrayQualityMetrics_3.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/arrayQualityMetrics
Package Short Url http://bioconductor.org/packages/arrayQualityMetrics/
Package Downloads Report Download Stats

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