To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("asmn")

In most cases, you don't need to download the package archive at all.

asmn

All sample mean normalization.

Bioconductor version: Release (3.0)

Performs all sample mean normalization using raw data output from BeadStudio and MethyLumiM data.

Author: 'Anna Decker <deckera at berkeley.edu> [aut,cre], Paul Yousefi <yousefi at berkeley.edu> [aut,cre]'

Maintainer: Anna Decker <deckera at berkeley.edu>

Citation (from within R, enter citation("asmn")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("asmn")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("asmn")

 

PDF R Script Vignette for R package asmn
PDF   Reference Manual

Details

biocViews DNAMethylation, Preprocessing, QualityControl, Software, TwoChannel
Version 1.2.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-3
Depends R (>= 3.0.2)
Imports methylumi, stats, Biobase
LinkingTo
Suggests TCGAMethylation450k, IlluminaHumanMethylation450k.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source asmn_1.2.0.tar.gz
Windows Binary asmn_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) asmn_1.2.0.tgz
Mac OS X 10.9 (Mavericks) asmn_1.2.0.tgz
Browse/checkout source (username/password: readonly)
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