beachmat

DOI: 10.18129/B9.bioc.beachmat    

Compiling Bioconductor to Handle Each Matrix Type

Bioconductor version: Release (3.7)

Provides a consistent C++ class interface for a variety of commonly used matrix types, including sparse and HDF5-backed matrices.

Author: Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut]

Maintainer: Aaron Lun <alun at wehi.edu.au>

Citation (from within R, enter citation("beachmat")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("beachmat")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beachmat")

 

HTML R Script Linking to beachmat with C++ code from another package
HTML R Script Using beachmat to read data from R matrices in C++
HTML R Script Using beachmat to write data into R matrix objects
HTML R Script Using beachmat's helper functions in R
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DataRepresentation, Infrastructure, Software
Version 1.2.1
License GPL-3
Depends R (>= 3.5)
Imports utils, methods, Rhdf5lib(>= 1.1.4), rhdf5, HDF5Array(>= 1.7.3), DelayedArray(>= 0.5.30), Rcpp (>= 0.12.14)
LinkingTo Rcpp, Rhdf5lib
Suggests testthat, BiocStyle, knitr, rmarkdown, Matrix, devtools
SystemRequirements C++11
Enhances
URL
Depends On Me
Imports Me
Suggests Me DropletUtils, scater, scran
Links To Me DropletUtils, scater, scran
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package beachmat_1.2.1.tar.gz
Windows Binary beachmat_1.2.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) beachmat_1.2.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/beachmat
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/beachmat
Package Short Url http://bioconductor.org/packages/beachmat/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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