To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("beadarraySNP")

In most cases, you don't need to download the package archive at all.

beadarraySNP

 

Normalization and reporting of Illumina SNP bead arrays

Bioconductor version: Release (3.1)

Importing data from Illumina SNP experiments and performing copy number calculations and reports.

Author: Jan Oosting

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Citation (from within R, enter citation("beadarraySNP")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("beadarraySNP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beadarraySNP")

 

PDF R Script beadarraySNP.pdf
PDF   Reference Manual

Details

biocViews CopyNumberVariation, DataImport, GeneticVariability, Preprocessing, SNP, Software, TwoChannel
Version 1.34.0
In Bioconductor since BioC 1.9 (R-2.4) (8.5 years)
License GPL-2
Depends methods, Biobase(>= 2.14), quantsmooth
Imports
LinkingTo
Suggests aCGH, affy, limma, snapCGH, beadarray, DNAcopy
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source beadarraySNP_1.34.0.tar.gz
Windows Binary beadarraySNP_1.34.0.zip
Mac OS X 10.6 (Snow Leopard) beadarraySNP_1.34.0.tgz
Mac OS X 10.9 (Mavericks) beadarraySNP_1.34.0.tgz
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