To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("biomvRCNS")

In most cases, you don't need to download the package archive at all.

biomvRCNS

 

   

Copy Number study and Segmentation for multivariate biological data

Bioconductor version: Release (3.3)

In this package, a Hidden Semi Markov Model (HSMM) and one homogeneous segmentation model are designed and implemented for segmentation genomic data, with the aim of assisting in transcripts detection using high throughput technology like RNA-seq or tiling array, and copy number analysis using aCGH or sequencing.

Author: Yang Du

Maintainer: Yang Du <tooyoung at gmail.com>

Citation (from within R, enter citation("biomvRCNS")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("biomvRCNS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biomvRCNS")

 

PDF R Script biomvRCNS package introduction
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Genetics, Microarray, Sequencing, Software, Visualization, aCGH
Version 1.12.0
In Bioconductor since BioC 2.12 (R-3.0) (3.5 years)
License GPL (>= 2)
Depends IRanges, GenomicRanges, Gviz
Imports methods, mvtnorm
LinkingTo
Suggests cluster, parallel, GenomicFeatures, dynamicTreeCut, Rsamtools, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source biomvRCNS_1.12.0.tar.gz
Windows Binary biomvRCNS_1.12.0.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) biomvRCNS_1.12.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/biomvRCNS/tree/release-3.3
Package Short Url http://bioconductor.org/packages/biomvRCNS/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: