To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("biovizBase")

In most cases, you don't need to download the package archive at all.

biovizBase

Basic graphic utilities for visualization of genomic data.

Bioconductor version: Release (2.14)

The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.

Author: Tengfei Yin, Michael Lawrence, Dianne Cook

Maintainer: Tengfei Yin <yintengfei at gmail.com>

To install this package, start R and enter:

Citation (from within R, enter citation("biovizBase")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("biovizBase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biovizBase")

 

PDF R Script An Introduction to biovizBase
PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Preprocessing, Software, Visualization
Version 1.12.1
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends R (>= 2.10), methods
Imports methods, grDevices, stats, scales, Hmisc, RColorBrewer, dichromat, BiocGenerics, IRanges, GenomicRanges(>= 1.13.3), Biostrings, Rsamtools(>= 1.13.1), GenomicAlignments, GenomicFeatures, AnnotationDbi, VariantAnnotation
Suggests BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome, rtracklayer
System Requirements
URL
Depends On Me CAFE, qrqc
Imports Me ggbio, Gviz, qrqc
Suggests Me Rariant

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source biovizBase_1.12.1.tar.gz
Windows Binary biovizBase_1.12.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) biovizBase_1.12.1.tgz
Mac OS X 10.9 (Mavericks) biovizBase_1.12.1.tgz
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