To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("bsseq")

In most cases, you don't need to download the package archive at all.

bsseq

Analyze, manage and store bisulfite sequencing data

Bioconductor version: Release (2.14)

Tools for analyzing and visualizing bisulfite sequencing data

Author: Kasper Daniel Hansen [aut, cre]

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

To install this package, start R and enter:

Citation (from within R, enter citation("bsseq")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("bsseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bsseq")

 

PDF R Script Analyzing WGBS with bsseq
PDF R Script The bsseq user's guide
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, Software
Version 1.0.0
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0
Depends R (>= 2.15), methods, BiocGenerics, IRanges, GenomicRanges, parallel, matrixStats
Imports scales, stats, graphics, Biobase, locfit
Suggests RUnit, bsseqData
System Requirements
URL
Depends On Me bsseqData
Imports Me DSS
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source bsseq_1.0.0.tar.gz
Windows Binary bsseq_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) bsseq_1.0.0.tgz
Mac OS X 10.9 (Mavericks) bsseq_1.0.0.tgz
Package Downloads Report Download Stats

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