To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cellHTS")

In most cases, you don't need to download the package archive at all.

cellHTS

 

   

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Analysis of cell-based screens

Bioconductor version: Release (3.2)

Analysis of cell-based RNA interference screens.

Author: Wolfgang Huber <huber at ebi.ac.uk>, Ligia Bras <ligia at ebi.ac.uk>, Michael Boutros <m.boutros at dkfz.de>

Maintainer: Andrzej OleĊ› <andrzej.oles at embl.de>

Citation (from within R, enter citation("cellHTS")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cellHTS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellHTS")

 

PDF Main vignette: End-to-end analysis of cell-based screens
PDF Supplement: multi-channel assays
PDF Supplement: two-way assays
PDF   Reference Manual

Details

biocViews CellBasedAssays, Software, Visualization
Version 1.40.2
In Bioconductor since BioC 1.8 (R-2.3) (10 years)
License Artistic-2.0
Depends R (>= 2.10), grid
Imports Biobase, prada, RColorBrewer, genefilter
LinkingTo
Suggests Category, ggplot2, GO.db, gridBase, vsn(>= 2.0.35)
SystemRequirements
Enhances
URL http://www.dkfz.de/signaling http://www.ebi.ac.uk/huber
Depends On Me
Imports Me
Suggests Me prada
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source cellHTS_1.40.2.tar.gz
Windows Binary cellHTS_1.40.2.zip
Mac OS X 10.6 (Snow Leopard) cellHTS_1.40.0.tgz
Mac OS X 10.9 (Mavericks) cellHTS_1.40.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/cellHTS/tree/release-3.2
Package Short Url http://bioconductor.org/packages/cellHTS/
Package Downloads Report Download Stats

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