To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("chroGPS")

In most cases, you don't need to download the package archive at all.

chroGPS

 

chroGPS: visualizing the epigenome

Bioconductor version: Release (3.1)

We provide intuitive maps to visualize the association between genetic elements, with emphasis on epigenetics. The approach is based on Multi-Dimensional Scaling. We provide several sensible distance metrics, and adjustment procedures to remove systematic biases typically observed when merging data obtained under different technologies or genetic backgrounds.

Author: Oscar Reina, David Rossell

Maintainer: Oscar Reina <oscar.reina at irbbarcelona.org>

Citation (from within R, enter citation("chroGPS")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("chroGPS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chroGPS")

 

PDF R Script Manual for the chroGPS library
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, Software, Visualization
Version 1.12.0
In Bioconductor since BioC 2.11 (R-2.15) (3 years)
License GPL (>=2.14)
Depends R (>= 2.13.0), IRanges, methods, Biobase, MASS, graphics, stats, changepoint
Imports cluster, DPpackage, ICSNP
LinkingTo
Suggests
SystemRequirements
Enhances parallel, XML, rgl
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source chroGPS_1.12.0.tar.gz
Windows Binary chroGPS_1.12.0.zip
Mac OS X 10.6 (Snow Leopard) chroGPS_1.12.0.tgz
Mac OS X 10.9 (Mavericks) chroGPS_1.12.0.tgz
Subversion source (username/password: readonly)
GitHub source https://github.com/Bioconductor-mirror/chroGPS/tree/release-3.1
Package Short Url http://bioconductor.org/packages/chroGPS/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center