chroGPS

chroGPS: visualizing the epigenome

Bioconductor version: Release (2.14)

We provide intuitive maps to visualize the association between genetic elements, with emphasis on epigenetics. The approach is based on Multi-Dimensional Scaling. We provide several sensible distance metrics, and adjustment procedures to remove systematic biases typically observed when merging data obtained under different technologies or genetic backgrounds.

Author: Oscar Reina, David Rossell

Maintainer: Oscar Reina <oscar.reina at irbbarcelona.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("chroGPS")

To cite this package in a publication, start R and enter:

    citation("chroGPS")

Documentation

PDF R Script Manual for the chroGPS library
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL (>=2)
Depends R (>= 2.13.0), IRanges, methods, Biobase, MASS, graphics, stats, rgl, changepoint
Imports graphics, cluster, DPpackage, ICSNP
Suggests
System Requirements
URL
Depends On Me
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Package Downloads

Package Source chroGPS_1.8.0.tar.gz
Windows Binary chroGPS_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) chroGPS_1.8.0.tgz
Mac OS X 10.9 (Mavericks)
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