clippda

A package for the clinical proteomic profiling data analysis

Methods for the nalysis of data from clinical proteomic profiling studies. The focus is on the studies of human subjects, which are often observational case-control by design and have technical replicates. A method for sample size determination for planning these studies is proposed. It incorporates routines for adjusting for the expected heterogeneities and imbalances in the data and the within-sample replicate correlations.

Author	Stephen Nyangoma
Maintainer	Stephen Nyangoma

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("clippda")

Documentation

Sample Size Calculation	PDF	R Script
Reference Manual

Details

biocViews	Proteomics , OneChannel , DataPreprocessing , Bioinformatics , DifferentialExpression , MultipleComparisons , SampleSize
Depends	R , limma , statmod , scatterplot3d , graphics , grDevices , stats , utils , Biobase , tools , methods
Imports
Suggests
System Requirements
License	GPL (>=2)
URL	http://www.cancerstudies.bham.ac.uk/crctu/CLIPPDA.shtml
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Package Downloads

Package source	clippda_1.2.0.tar.gz
Windows 32-bit binary	clippda_1.2.0.zip
Windows 64-bit binary	clippda_1.2.0.zip
MacOS X 10.5 (Leopard) binary	clippda_1.2.0.tgz
Package Downloads Report	Downloads Stats