To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("cobindR")

In most cases, you don't need to download the package archive at all.

cobindR

 

Finding Co-occuring motifs of transcription factor binding sites

Bioconductor version: Release (3.1)

Finding and analysing co-occuring motifs of transcription factor binding sites in groups of genes

Author: Manuela Benary, Stefan Kroeger, Yuehien Lee, Robert Lehmann

Maintainer: Manuela Benary <manuela.benary at cms.hu-berlin.de>

Citation (from within R, enter citation("cobindR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("cobindR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cobindR")

 

PDF R Script Using cobindR
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBiology, ChIPSeq, MultipleComparison, SequenceMatching, Software
Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0) (2 years)
License Artistic-2.0
Depends
Imports methods, seqinr, yaml, rtfbs, gplots, mclust, gmp, BiocGenerics(>= 0.13.8), IRanges, Biostrings, BSgenome, biomaRt
LinkingTo
Suggests RUnit
SystemRequirements
Enhances rGADEM, seqLogo, genoPlotR, parallel, VennDiagram, RColorBrewer, vcd, MotifDb, snowfall
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source cobindR_1.6.0.tar.gz
Windows Binary cobindR_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) cobindR_1.6.0.tgz
Mac OS X 10.9 (Mavericks) cobindR_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/cobindR/tree/release-3.1
Package Short Url http://bioconductor.org/packages/cobindR/
Package Downloads Report Download Stats

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