To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("copa")

In most cases, you don't need to download the package archive at all.

copa

Functions to perform cancer outlier profile analysis.

Bioconductor version: Release (2.14)

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("copa")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("copa")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("copa")

 

PDF R Script copa Overview
PDF   Reference Manual

Details

biocViews DifferentialExpression, OneChannel, Software, TwoChannel, Visualization
Version 1.32.0
In Bioconductor since BioC 1.8 (R-2.3)
License Artistic-2.0
Depends Biobase, methods
Imports
Suggests colonCA
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source copa_1.32.0.tar.gz
Windows Binary copa_1.32.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) copa_1.32.0.tgz
Mac OS X 10.9 (Mavericks) copa_1.32.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center