diffcoexp

DOI: 10.18129/B9.bioc.diffcoexp    

Differential Co-expression Analysis

Bioconductor version: Release (3.8)

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Author: Wenbin Wei, Sandeep Amberkar, Winston Hide

Maintainer: Wenbin Wei <W.Wei at sheffield.ac.uk>

Citation (from within R, enter citation("diffcoexp")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("diffcoexp", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("diffcoexp")

 

PDF R Script About diffcoexp
PDF   Reference Manual
Text   NEWS

Details

biocViews Coverage, DifferentialExpression, GeneExpression, Microarray, OneChannel, RNASeq, Sequencing, Software, Transcription, TwoChannel
Version 1.2.0
License GPL (>2)
Depends R (>= 3.5), WGCNA, SummarizedExperiment
Imports stats, DiffCorr, psych, igraph, BiocGenerics
LinkingTo
Suggests GEOquery
SystemRequirements
Enhances
URL https://github.com/hidelab/diffcoexp
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package diffcoexp_1.2.0.tar.gz
Windows Binary diffcoexp_1.2.0.zip
Mac OS X 10.11 (El Capitan) diffcoexp_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/diffcoexp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/diffcoexp
Package Short Url http://bioconductor.org/packages/diffcoexp/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: