To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("domainsignatures")

In most cases, you don't need to download the package archive at all.

domainsignatures

 

Geneset enrichment based on InterPro domain signatures

Bioconductor version: Release (3.1)

Find significantly enriched gene classifications in a list of functionally undescribed genes based on their InterPro domain structure.

Author: Florian Hahne, Tim Beissbarth

Maintainer: Florian Hahne <florian.hahne at novartis.com>

Citation (from within R, enter citation("domainsignatures")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("domainsignatures")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("domainsignatures")

 

PDF R Script Gene set enrichment using InterPro domain signatures
PDF   Reference Manual

Details

biocViews Annotation, GeneSetEnrichment, Pathways, Software
Version 1.28.0
In Bioconductor since BioC 2.3 (R-2.8) (7 years)
License Artistic-2.0
Depends R (>= 2.4.0), KEGG.db, prada, biomaRt, methods
Imports AnnotationDbi
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source domainsignatures_1.28.0.tar.gz
Windows Binary domainsignatures_1.28.0.zip
Mac OS X 10.6 (Snow Leopard) domainsignatures_1.28.0.tgz
Mac OS X 10.9 (Mavericks) domainsignatures_1.28.0.tgz
Subversion source (username/password: readonly)
GitHub source https://github.com/Bioconductor-mirror/domainsignatures/tree/release-3.1
Package Short Url http://bioconductor.org/packages/domainsignatures/
Package Downloads Report Download Stats

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