edgeR

Empirical analysis of digital gene expression data in R

Estimation and Testing for Differential Expression in Multiple Digital Gene Expression Libraries.

Author	Mark Robinson , Davis McCarthy , Gordon Smyth
Maintainer	Mark Robinson , Davis McCarthy , Gordon Smyth

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("edgeR")

edgeR User's Guide	PDF	R Script
edgeR_case_study_Li_MDSplot.pdf	PDF
edgeR_case_study_longSAGE_MDSplot.pdf	PDF	R Script
Reference Manual

biocViews	Bioinformatics , DifferentialExpression , Statistics , SAGE , HighThroughputSequencing , RNAseq
Depends	R , methods
Imports	limma
Suggests	MASS
System Requirements
License	LGPL (>= 2)
URL
Depends On Me	oneChannelGUI
Imports Me
Suggests Me	goseq