To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ensemblVEP")

In most cases, you don't need to download the package archive at all.

ensemblVEP

R Interface to Ensembl Variant Effect Predictor

Bioconductor version: Release (3.0)

Query the Ensembl Variant Effect Predictor via the perl API

Author: Valerie Obenchain <vobencha at fhcrc.org>,

Maintainer: Valerie Obenchain <vobencha at fhcrc.org>

Citation (from within R, enter citation("ensemblVEP")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ensemblVEP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ensemblVEP")

 

PDF R Script ensemblVEP
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews Annotation, Software
Version 1.6.0
In Bioconductor since BioC 2.12 (R-3.0)
License Artistic-2.0
Depends methods, BiocGenerics, GenomicRanges, VariantAnnotation
Imports Biostrings
Suggests RUnit
System Requirements Ensembl VEP (API version 77) and the Perl package DBD::mysql must be installed. See the package README and Ensembl web site, http://www.ensembl.org/info/docs/tools/vep/index.html for installation instructions.
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ensemblVEP_1.6.0.tar.gz
Windows Binary ensemblVEP_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ensemblVEP_1.6.0.tgz
Mac OS X 10.9 (Mavericks) ensemblVEP_1.6.0.tgz
Browse/checkout source (username/password: readonly)
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