To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ensemblVEP")

In most cases, you don't need to download the package archive at all.

ensemblVEP

 

R Interface to Ensembl Variant Effect Predictor

Bioconductor version: Release (3.5)

Query the Ensembl Variant Effect Predictor via the perl API

Author: Valerie Obenchain

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("ensemblVEP")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ensemblVEP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ensemblVEP")

 

PDF R Script ensemblVEP
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews Annotation, SNP, Software, VariantAnnotation
Version 1.16.0
In Bioconductor since BioC 2.12 (R-3.0) (4.5 years)
License Artistic-2.0
Depends methods, BiocGenerics, GenomicRanges, VariantAnnotation
Imports S4Vectors(>= 0.9.25), Biostrings, SummarizedExperiment, GenomeInfoDb, stats
LinkingTo
Suggests RUnit
SystemRequirements Ensembl VEP (API version 88) and the Perl modules DBI and DBD::mysql must be installed. See the package README and Ensembl installation instructions: http://www.ensembl.org/info/docs/tools/vep/script/vep_download.html#installer
Enhances
URL
Depends On Me
Imports Me TVTB
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ensemblVEP_1.16.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) ensemblVEP_1.16.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ensemblVEP/tree/release-3.5
Package Short Url http://bioconductor.org/packages/ensemblVEP/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: