To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("flowFit")

In most cases, you don't need to download the package archive at all.

flowFit

Estimate proliferation in cell-tracking dye studies

Bioconductor version: Release (2.14)

This package estimate the proliferation of a cell population in cell-tracking dye studies. The package uses an R implementation of the Levenberg-Marquardt algorithm (minpack.lm) to fit a set of peaks (corresponding to different generations of cells) over the proliferation-tracking dye distribution in a FACS experiment.

Author: Davide Rambaldi

Maintainer: Davide Rambaldi <davide.rambaldi at gmail.com>

Citation (from within R, enter citation("flowFit")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("flowFit")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowFit")

 

PDF R Script Fitting Functions for Flow Cytometry Data
PDF   Reference Manual

Details

biocViews CellBasedAssays, FlowCytometry, Software
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License Artistic-2.0
Depends R (>= 2.12.2)
Imports flowCore, flowViz, graphics, methods, kza, minpack.lm, gplots
Suggests flowFitExampleData
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source flowFit_1.2.0.tar.gz
Windows Binary flowFit_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) flowFit_1.2.0.tgz
Mac OS X 10.9 (Mavericks) flowFit_1.2.0.tgz
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