To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("gaggle")

In most cases, you don't need to download the package archive at all.

gaggle

Broadcast data between R and Gaggle

Bioconductor version: Release (3.0)

This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.

Author: Paul Shannon <pshannon at systemsbiology.org>

Maintainer: Christopher Bare <cbare at systemsbiology.org>

Citation (from within R, enter citation("gaggle")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("gaggle")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gaggle")

 

PDF R Script Gaggle Overview
PDF   Reference Manual

Details

biocViews Annotation, DataImport, GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 1.34.0
In Bioconductor since BioC 1.9 (R-2.4)
License GPL version 2 or newer
Depends R (>= 2.3.0), rJava (>= 0.4), graph(>= 1.10.2), RUnit (>= 0.4.17)
Imports
Suggests
System Requirements
URL http://gaggle.systemsbiology.net/docs/geese/r/
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source gaggle_1.34.0.tar.gz
Windows Binary gaggle_1.34.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) gaggle_1.34.0.tgz
Mac OS X 10.9 (Mavericks) gaggle_1.34.0.tgz
Browse/checkout source (username/password: readonly)
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