gaucho

DOI: 10.18129/B9.bioc.gaucho    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Genetic Algorithms for Understanding Clonal Heterogeneity and Ordering

Bioconductor version: Release (3.8)

Use genetic algorithms to determine the relationship between clones in heterogenous populations such as cancer sequencing samples

Author: Alex Murison [aut, cre], Christopher Wardell [aut, cre]

Maintainer: Alex Murison <Alexander.Murison at icr.ac.uk>, Christopher Wardell <Christopher.Wardell at icr.ac.uk>

Citation (from within R, enter citation("gaucho")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("gaucho", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Genetics, SNP, Sequencing, Software, SomaticMutation
Version 1.18.0
In Bioconductor since BioC 2.14 (R-3.1) (4.5 years)
License GPL-3
Depends R (>= 3.0.0), compiler, GA, graph, heatmap.plus, png, Rgraphviz
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/gaucho
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gaucho
Package Short Url http://bioconductor.org/packages/gaucho/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: