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Provides classes similar to ExpressionSet for copy number analysis

Bioconductor version: Release (3.0)

Load, manipulate, and plot copynumber and BAF data. GenoSet class extends eSet by adding a "locData" slot for a GRanges object. This object contains feature genome location data and provides for efficient subsetting on genome location. Provides convenience functions for processing of copy number and B-Allele Frequency data. Provides the class RleDataFrame to store runs of data along the genome for multiple samples.

Author: Peter M. Haverty

Maintainer: Peter M. Haverty <phaverty at>

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biocViews CopyNumberVariation, DataRepresentation, Infrastructure, Microarray, SNP, Software
Version 1.20.0
In Bioconductor since BioC 2.8 (R-2.13)
License Artistic-2.0
Depends R (>= 2.10), BiocGenerics(>= 0.11.3), Biobase(>= 2.15.1), GenomicRanges(>= 1.17.19)
Imports S4Vectors(>= 0.2.3), GenomeInfoDb(>= 1.1.3), IRanges, methods, graphics
Suggests RUnit, DNAcopy, stats, BSgenome, Biostrings
Depends On Me VegaMC
Imports Me methyAnalysis
Suggests Me

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