To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("h5vc")

In most cases, you don't need to download the package archive at all.

h5vc

 

Managing alignment tallies using a hdf5 backend

Bioconductor version: Release (3.1)

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files. For detail see the webpage at http://www.ebi.ac.uk/~pyl/h5vc.

Author: Paul Theodor Pyl

Maintainer: Paul Theodor Pyl <pyl at embl.de>

Citation (from within R, enter citation("h5vc")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("h5vc")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("h5vc")

 

HTML R Script Building a minimal genome browser with h5vc and shiny
HTML R Script h5vc -- Tour
PDF   Reference Manual

Details

biocViews Software
Version 2.2.0
In Bioconductor since BioC 2.13 (R-3.0) (2 years)
License GPL (>= 3)
Depends grid, gridExtra, ggplot2
Imports rhdf5, reshape, S4Vectors, IRanges, Biostrings, Rsamtools(>= 1.19.38), methods, GenomicRanges, abind, BiocParallel, BatchJobs, h5vcData, GenomeInfoDb
LinkingTo Rsamtools
Suggests knitr, locfit, BSgenome.Hsapiens.UCSC.hg19, bit64, biomaRt, BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me h5vcData
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source h5vc_2.2.0.tar.gz
Windows Binary h5vc_2.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) h5vc_2.2.0.tgz
Mac OS X 10.9 (Mavericks) h5vc_2.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/h5vc/tree/release-3.1
Package Short Url http://bioconductor.org/packages/h5vc/
Package Downloads Report Download Stats

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