igvR

DOI: 10.18129/B9.bioc.igvR    

igvR: integrative genomics viewer

Bioconductor version: Release (3.7)

Access to igv.js, the Integrative Genomics Viewer running in a web browser.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Citation (from within R, enter citation("igvR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("igvR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("igvR")

 

HTML R Script igvR: programmatic access to igv.js, a browser-based genome track viewer
PDF   Reference Manual
Text   LICENSE

Details

biocViews Software, ThirdPartyClient, Visualization
Version 1.0.1
License MIT + file LICENSE
Depends R (>= 3.5.0), GenomicRanges, VariantAnnotation, rtracklayer, BrowserViz(>= 2.0)
Imports methods, BiocGenerics, httpuv, utils
LinkingTo
Suggests RUnit, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package igvR_1.0.1.tar.gz
Windows Binary igvR_1.0.1.zip
Mac OS X 10.11 (El Capitan) igvR_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/igvR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/igvR
Package Short Url http://bioconductor.org/packages/igvR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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