To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("imageHTS")

In most cases, you don't need to download the package archive at all.

imageHTS

 

Analysis of high-throughput microscopy-based screens

Bioconductor version: Release (3.1)

imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote data and facilitates the dissemination of high-throughput microscopy-based datasets.

Author: Gregoire Pau, Xian Zhang, Michael Boutros, Wolfgang Huber

Maintainer: Joseph Barry <joseph.barry at embl.de>

Citation (from within R, enter citation("imageHTS")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("imageHTS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("imageHTS")

 

PDF R Script Analysis of high-throughput microscopy-based screens with imageHTS
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, Preprocessing, Software, Visualization
Version 1.18.0
In Bioconductor since BioC 2.7 (R-2.12) (4.5 years)
License LGPL-2.1
Depends R (>= 2.9.0), EBImage(>= 4.3.12), cellHTS2(>= 2.10.0)
Imports tools, Biobase, hwriter, methods, vsn, stats, utils, e1071
LinkingTo
Suggests BiocStyle, MASS
SystemRequirements
Enhances
URL
Depends On Me phenoDist
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source imageHTS_1.18.0.tar.gz
Windows Binary imageHTS_1.18.0.zip
Mac OS X 10.6 (Snow Leopard) imageHTS_1.18.0.tgz
Mac OS X 10.9 (Mavericks) imageHTS_1.18.0.tgz
Browse/checkout source (username/password: readonly)
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