To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("keggorthology")

In most cases, you don't need to download the package archive at all.

keggorthology

 

graph support for KO, KEGG Orthology

Bioconductor version: Release (3.1)

graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("keggorthology")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("keggorthology")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("keggorthology")

 

PDF R Script keggorthology overview
PDF   Reference Manual

Details

biocViews GraphAndNetwork, KEGG, Pathways, Software, Visualization
Version 2.20.0
In Bioconductor since BioC 2.6 (R-2.11) (5 years)
License Artistic-2.0
Depends R (>= 2.5.0), stats, graph, hgu95av2.db
Imports AnnotationDbi, graph, DBI, graph, grDevices, methods, stats, tools, utils
LinkingTo
Suggests RBGL, ALL
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me MLInterfaces
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source keggorthology_2.20.0.tar.gz
Windows Binary keggorthology_2.20.0.zip
Mac OS X 10.6 (Snow Leopard) keggorthology_2.20.0.tgz
Mac OS X 10.9 (Mavericks) keggorthology_2.20.0.tgz
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