To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("limma")

In most cases, you don't need to download the package archive at all.

limma

 

Linear Models for Microarray Data

Bioconductor version: Release (3.1)

Data analysis, linear models and differential expression for microarray data.

Author: Gordon Smyth [cre,aut], Matthew Ritchie [ctb], Jeremy Silver [ctb], James Wettenhall [ctb], Natalie Thorne [ctb], Davis McCarthy [ctb], Di Wu [ctb], Yifang Hu [ctb], Wei Shi [ctb], Belinda Phipson [ctb], Alicia Oshlack [ctb], Carolyn de Graaf [ctb], Mette Langaas [ctb], Egil Ferkingstad [ctb], Marcus Davy [ctb], Francois Pepin [ctb], Dongseok Choi [ctb], Aaron Lun [ctb]

Maintainer: Gordon Smyth <smyth at wehi.edu.au>

Citation (from within R, enter citation("limma")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("limma")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("limma")

 

PDF R Script Limma One Page Introduction
PDF usersguide.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews AlternativeSplicing, BatchEffect, Bayesian, Clustering, DataImport, DifferentialExpression, DifferentialSplicing, ExonArray, GeneExpression, GeneSetEnrichment, Genetics, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, RNASeq, Regression, Software, TimeCourse, Transcription, TwoChannel, mRNAMicroarray, microRNAArray
Version 3.24.12
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 10 years)
License GPL (>=2)
Depends R (>= 2.3.0), methods
Imports
LinkingTo
Suggests affy, AnnotationDbi, BiasedUrn, Biobase, ellipse, GO.db, illuminaio, KEGGREST, locfit, MASS, org.Hs.eg.db, splines, statmod (>= 1.2.2), vsn
SystemRequirements
Enhances
URL http://bioinf.wehi.edu.au/limma
Depends On Me a4Base, AffyExpress, AgiMicroRna, attract, birta, CALIB, CCl4, cghMCR, ChimpHumanBrainData, clippda, codelink, convert, Cormotif, coRNAi, DiffBind, DMRcate, DrugVsDisease, edgeR, ExiMiR, FEM, Fletcher2013a, gCMAP, HD2013SGI, HTqPCR, maigesPack, maPredictDSC, marray, metagenomeSeq, metaseqR, MLSeq, MmPalateMiRNA, prot2D, qpcrNorm, qusage, RBM, Ringo, RnBeads, Rnits, snapCGH, SSPA, tRanslatome, TurboNorm, wateRmelon
Imports Me affycoretools, affylmGUI, ArrayExpress, arrayQuality, arrayQualityMetrics, ArrayTools, attract, ballgown, beadarray, BeadArrayUseCases, betr, birte, bumphunter, CALIB, CancerMutationAnalysis, casper, ChAMP, charm, ChIPpeakAnno, compcodeR, csaw, diffHic, DmelSGI, EnrichmentBrowser, erccdashboard, explorase, flowBin, GeneSelectMMD, GeneSelector, GGBase, GOsummaries, gQTLstats, HTqPCR, iChip, InPAS, limmaGUI, lmdme, LVSmiRNA, mAPKL, maSigPro, minfi, missMethyl, MmPalateMiRNA, monocle, MSstats, nem, nethet, OLIN, PAA, PADOG, PECA, pepStat, phenoTest, polyester, ReportingTools, Ringo, RNAinteract, RNAither, RTN, RTopper, SimBindProfiles, snapCGH, STATegRa, systemPipeR, timecourse, ToPASeq, tweeDEseq, vsn
Suggests Me ABarray, ADaCGH2, beadarraySNP, BiocCaseStudies, BioNet, Category, categoryCompare, ClassifyR, CMA, coGPS, dyebias, ELBOW, gage, GeneSelector, GEOquery, GSRI, GSVA, Heatplus, inSilicoDb, isobar, les, lumi, mammaPrintData, mdgsa, methylumi, MLP, npGSEA, oligo, oneChannelGUI, paxtoolsr, PGSEA, piano, plw, PREDA, puma, Rcade, RTopper, rtracklayer, seventyGeneData, sva
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source limma_3.24.12.tar.gz
Windows Binary limma_3.24.12.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) limma_3.24.12.tgz
Mac OS X 10.9 (Mavericks) limma_3.24.12.tgz
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