mQTL.NMR

DOI: 10.18129/B9.bioc.mQTL.NMR    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Metabolomic Quantitative Trait Locus Mapping for 1H NMR data

Bioconductor version: Release (3.8)

mQTL.NMR provides a complete mQTL analysis pipeline for 1H NMR data. Distinctive features include normalisation using most-used approaches, peak alignment using RSPA approach, dimensionality reduction using SRV and binning approaches, and mQTL analysis for animal and human cohorts.

Author: Lyamine Hedjazi and Jean-Baptiste Cazier

Maintainer: Lyamine Hedjazi <mqtl at ican-institute.org>

Citation (from within R, enter citation("mQTL.NMR")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("mQTL.NMR", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Cheminformatics, Genetics, Metabolomics, SNP, Software
Version 1.16.0
In Bioconductor since BioC 3.0 (R-3.1) (4.5 years)
License Artistic-2.0
Depends R (>= 2.15.0)
Imports qtl, GenABEL, MASS, outliers, graphics, stats, utils
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL http://www.ican-institute.org/tools/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/mQTL.NMR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mQTL.NMR
Package Short Url http://bioconductor.org/packages/mQTL.NMR/
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