manta

Microbial Assemblage Normalized Transcript Analysis

Bioconductor version: Release (2.14)

Tools for robust comparative metatranscriptomics.

Author: Ginger Armbrust, Adrian Marchetti

Maintainer: Chris Berthiaume <chrisbee at uw.edu>, Adrian Marchetti <amarchetti at unc.edu>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("manta")

Citation (from within R, enter citation("manta")):

Documentation

PDF R Script manta
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataImport, DifferentialExpression, GeneExpression, Genetics, QualityControl, RNASeq, Sequencing, Software, Visualization
Version 1.10.0
In Bioconductor since BioC 2.10 (R-2.15)
License Artistic-2.0
Depends R (>= 1.8.0), methods, edgeR(>= 2.5.13)
Imports Hmisc, caroline (>= 0.6.6)
Suggests RSQLite, plotrix
System Requirements
URL http://manta.ocean.washington.edu/
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source manta_1.10.0.tar.gz
Windows Binary manta_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) manta_1.10.0.tgz
Mac OS X 10.9 (Mavericks) manta_1.10.0.tgz
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