marray

Exploratory analysis for two-color spotted microarray data

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author	Yee Hwa (Jean) Yang with contributions from Agnes Paquet and Sandrine Dudoit.
Maintainer	Yee Hwa (Jean) Yang

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("marray")

ExampleHTML.pdf	PDF
marray Normalization	PDF	R Script
marray Overview	PDF	R Script
marrayClasses Overview	PDF	R Script
marrayClasses Tutorial (short)	PDF	R Script
marrayInput Introduction	PDF	R Script
marrayPlots Overview	PDF	R Script
widget1.pdf	PDF	R Script
Reference Manual

biocViews	Microarray , TwoChannel , Preprocessing
Depends	R , limma , methods
Imports
Suggests	tkWidgets
System Requirements
License	LGPL
URL	http://www.maths.usyd.edu.au/u/jeany/
Depends On Me	CGHbase , GeneTraffic , OLIN , RMAGEML , convert , dyebias , maigesPack , nnNorm , stepNorm
Imports Me	arrayQualityMetrics , arrayQuality , nnNorm
Suggests Me	Agi4x44PreProcess , AgiMicroRna , Mfuzz , hexbin , limma