mbOmic

DOI: 10.18129/B9.bioc.mbOmic    

Integrative analysis of the microbiome and metabolome

Bioconductor version: Release (3.15)

The mbOmic package contains a set of analysis functions for microbiomics and metabolomics data, designed to analyze the inter-omic correlation between microbiology and metabolites. Integrative analysis of the microbiome and metabolome is the aim of mbOmic. Additionally, the identification of enterotype using the gut microbiota abundance is preliminaryimplemented.

Author: Congcong Gong [aut, cre]

Maintainer: Congcong Gong <congconggong33 at gmail.com>

Citation (from within R, enter citation("mbOmic")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mbOmic")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mbOmic")

 

HTML R Script enterotyping
HTML R Script Integrative analysis of metabolome and microbiome
PDF   Reference Manual
Text   NEWS

Details

biocViews Metabolomics, Microbiome, Network, Software
Version 1.0.0
In Bioconductor since BioC 3.15 (R-4.2) (< 6 months)
License Artistic-2.0
Depends R (>= 4.1.0)
Imports parallel, doParallel, psych, WGCNA, data.table, igraph, visNetwork, cluster, clusterSim, methods, graphics, stats
LinkingTo
Suggests testthat (>= 3.0.0), knitr, rmarkdown, devtools, impute
SystemRequirements
Enhances
URL https://github.com/gongcongcong/mbOmic
BugReports https://github.com/gongcongcong/mbOmic/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mbOmic_1.0.0.tar.gz
Windows Binary mbOmic_1.0.0.zip
macOS 10.13 (High Sierra) mbOmic_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mbOmic
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mbOmic
Package Short Url https://bioconductor.org/packages/mbOmic/
Package Downloads Report Download Stats

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