To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("metaseqR")

In most cases, you don't need to download the package archive at all.

metaseqR

metaseqR: an R package for the analysis and result reporting of RNA-Seq gene expression data using multiple statistical algorithms.

Bioconductor version: Release (2.14)

Provides an interface to several normalization and statistical testing packages for RNA-Seq gene expression data. Additionally, it creates several diagnostic plots, performs meta-analysis by combinining the results of several statistical tests and reports the results in an interactive way.

Author: Panagiotis Moulos <moulos at fleming.gr>

Maintainer: Panagiotis Moulos <moulos at fleming.gr>

To install this package, start R and enter:

Citation (from within R, enter citation("metaseqR")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("metaseqR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metaseqR")

 

PDF R Script RNA-Seq data analysis using mulitple statistical algorithms with metaseqR
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, ReportWriting, Software, WorkflowStep
Version 1.2.2
In Bioconductor since BioC 2.14 (R-3.1)
License GPL (>= 3)
Depends R (>= 2.13.0), EDASeq, DESeq, limma, qvalue
Imports edgeR, NOISeq, baySeq, NBPSeq, biomaRt, utils, gplots, corrplot, vsn, brew, rjson, log4r
Suggests BiocGenerics, GenomicRanges, rtracklayer, Rsamtools, MADAM, survcomp, VennDiagram, knitr, zoo, RUnit
System Requirements
URL http://www.fleming.gr
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source metaseqR_1.2.2.tar.gz
Windows Binary metaseqR_1.2.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) metaseqR_1.2.2.tgz
Mac OS X 10.9 (Mavericks) metaseqR_1.2.2.tgz
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