DOI: 10.18129/B9.bioc.mitoODE    

Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"

Bioconductor version: Release (3.8)

The package contains the methods to fit a cell-cycle model on cell count data and the code to reproduce the results shown in our paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay" by Pau, G., Walter, T., Neumann, B., Heriche, J.-K., Ellenberg, J., & Huber, W., BMC Bioinformatics (2013), 14(1), 308. doi:10.1186/1471-2105-14-308

Author: Gregoire Pau

Maintainer: Gregoire Pau <pau.gregoire at>

Citation (from within R, enter citation("mitoODE")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("mitoODE", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews CellBasedAssays, ExperimentData, ImmunoOncology, Preprocessing, Software, TimeCourse
Version 1.20.1
In Bioconductor since BioC 2.13 (R-3.0) (5.5 years)
License LGPL
Depends R (>= 2.14.0), minpack.lm, MASS, parallel, mitoODEdata, KernSmooth
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