To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mosaics")

In most cases, you don't need to download the package archive at all.

mosaics

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Bioconductor version: Release (2.14)

This package provides functions for fitting MOSAiCS, a statistical framework to analyze one-sample or two-sample ChIP-seq data.

Author: Dongjun Chung, Pei Fen Kuan, Sunduz Keles

Maintainer: Dongjun Chung <chungdon at stat.wisc.edu>

Citation (from within R, enter citation("mosaics")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mosaics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mosaics")

 

PDF R Script MOSAiCS
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Genetics, Sequencing, Software, Transcription
Version 1.12.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL (>= 2)
Depends R (>= 2.11.1), methods, graphics, Rcpp
Imports MASS, splines, lattice, IRanges, Rcpp
Suggests mosaicsExample
System Requirements Perl
URL http://groups.google.com/group/mosaics_user_group
Depends On Me jmosaics
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source mosaics_1.12.0.tar.gz
Windows Binary mosaics_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) mosaics_1.12.0.tgz
Mac OS X 10.9 (Mavericks) mosaics_1.12.0.tgz
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