To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("motifRG")

In most cases, you don't need to download the package archive at all.

motifRG

A package for discriminative motif discovery, designed for high throughput sequencing dataset

Bioconductor version: Release (2.14)

Tools for discriminative motif discovery using regression methods

Author: Zizhen Yao

Maintainer: Zizhen Yao <yzizhen at fhcrc.org>

Citation (from within R, enter citation("motifRG")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("motifRG")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("motifRG")

 

PDF R Script motifRG: regression-based discriminative motif discovery
PDF   Reference Manual

Details

biocViews MotifDiscovery, Software, Transcription
Version 1.8.0
In Bioconductor since BioC 2.10 (R-2.15)
License Artistic-2.0
Depends R (>= 2.15), Biostrings(>= 2.26), IRanges, seqLogo, parallel, methods, grid, graphics, BSgenome, XVector, BSgenome.Hsapiens.UCSC.hg19
Imports Biostrings, IRanges, seqLogo, parallel, methods, grid, graphics, XVector
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source motifRG_1.8.0.tar.gz
Windows Binary motifRG_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) motifRG_1.8.0.tgz
Mac OS X 10.9 (Mavericks) motifRG_1.8.0.tgz
Browse/checkout Source (username/password: readonly)
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