motifRG

A package for discriminative motif discovery, designed for high throughput sequencing dataset

Bioconductor version: Release (2.14)

Tools for discriminative motif discovery using regression methods

Author: Zizhen Yao

Maintainer: Zizhen Yao <yzizhen at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("motifRG")

To cite this package in a publication, start R and enter:

    citation("motifRG")

Documentation

PDF R Script motifRG: regression-based discriminative motif discovery
PDF   Reference Manual

Details

biocViews MotifDiscovery, Software, Transcription
Version 1.8.0
In Bioconductor since BioC 2.10 (R-2.15)
License Artistic-2.0
Depends R (>= 2.15), Biostrings(>= 2.26), IRanges, seqLogo, parallel, methods, grid, graphics, BSgenome, XVector, BSgenome.Hsapiens.UCSC.hg19
Imports Biostrings, IRanges, seqLogo, parallel, methods, grid, graphics, XVector
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source motifRG_1.8.0.tar.gz
Windows Binary motifRG_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) motifRG_1.8.0.tgz
Mac OS X 10.9 (Mavericks)
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