nudge

DOI: 10.18129/B9.bioc.nudge    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Normal Uniform Differential Gene Expression detection

Bioconductor version: Release (3.8)

Package for normalizing microarray data in single and multiple replicate experiments and fitting a normal-uniform mixture to detect differentially expressed genes in the cases where the two samples are being compared directly or indirectly (via a common reference sample)

Author: N. Dean <nemad at stat.washington.edu> and A. E. Raftery <raftery at stat.washington.edu>

Maintainer: N. Dean <nemad at stat.washington.edu>

Citation (from within R, enter citation("nudge")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("nudge", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DifferentialExpression, Microarray, Software, TwoChannel
Version 1.48.0
In Bioconductor since BioC 1.8 (R-2.3) (13 years)
License GPL-2
Depends
Imports stats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/nudge
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nudge
Package Short Url http://bioconductor.org/packages/nudge/
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