oneChannelGUI

A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops.

Bioconductor version: Release (2.14)

This package was developed to simplify the use of Bioconductor tools for beginners having limited or no experience in writing R code. This library provides a graphical interface for microarray gene and exon level analysis as well as miRNA/mRNA-seq data analysis.

Author: Raffale A Calogero, Bioinformatics and Genomics Unit, Molecular Biotechnology Center, Torino (Italy)

Maintainer: Raffaele A Calogero <raffaele.calogero at unito.it>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("oneChannelGUI")

To cite this package in a publication, start R and enter:

    citation("oneChannelGUI")

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DifferentialExpression, GUI, Microarray, MultipleComparison, OneChannel, Preprocessing, QualityControl, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.30.0
In Bioconductor since BioC 2.0 (R-2.5)
License Artistic-2.0
Depends Biobase, affylmGUI, tkrplot, tkWidgets, IRanges, Rsamtools(>= 1.13.1), Biostrings, siggenes, chimera
Imports
Suggests annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno, chipseq, BSgenome, Rgraphviz, affy, annaffy, affyPLM, multtest, ssize, sizepower, RankProd, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, edgeR, metaArray, MergeMaid, biomaRt, GenomeGraphs, AffyCompatible, rtracklayer, Genominator, EDASeq, limma, DESeq, DEXSeq, goseq, hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db, GOstats, AnnotationDbi, preprocessCore, baySeq, HuExExonProbesetLocation, MoExExonProbesetLocation, RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, BSgenome.Rnorvegicus.UCSC.rn4, R.utils, cummeRbund
System Requirements
URL http://www.bioinformatica.unito.it/oneChannelGUI/
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source oneChannelGUI_1.30.0.tar.gz
Windows Binary oneChannelGUI_1.30.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) oneChannelGUI_1.30.0.tgz
Mac OS X 10.9 (Mavericks)
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