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A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops

Bioconductor version: Release (3.1)

This package was developed to simplify the use of Bioconductor tools for beginners having limited or no experience in writing R code. This library provides a graphical interface for microarray gene and exon level analysis as well as miRNA/mRNA-seq data analysis

Author: Raffale A Calogero, Bioinformatics and Genomics Unit, Molecular Biotechnology Center, Torino (Italy)

Maintainer: Raffaele A Calogero <raffaele.calogero at>

Citation (from within R, enter citation("oneChannelGUI")):


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PDF R Script oneChannelGUI Installation
PDF R Script oneChannelGUI microarray exon-level data analysis overview
PDF R Script oneChannelGUI microarray gene-level data analysis overview
PDF R Script oneChannelGUI miRNA and RNA-seq data analysis overview
PDF R Script oneChannelGUI Stand Alone Functions
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DifferentialExpression, GUI, Microarray, MultipleComparison, OneChannel, Preprocessing, QualityControl, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.34.0
In Bioconductor since BioC 2.0 (R-2.5) (8.5 years)
License Artistic-2.0
Depends Biobase, affylmGUI, tkrplot, tkWidgets, IRanges, Rsamtools(>= 1.13.1), Biostrings, siggenes, chimera
Suggests annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno, chipseq, BSgenome, Rgraphviz, affy, annaffy, affyPLM, multtest, ssize, sizepower, RankProd,,,, edgeR, metaArray, MergeMaid, biomaRt, GenomeGraphs, AffyCompatible, rtracklayer, Genominator, EDASeq, limma, DESeq, DEXSeq, goseq, hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db, GOstats, AnnotationDbi, preprocessCore, baySeq, HuExExonProbesetLocation, MoExExonProbesetLocation, RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA, BSgenome.Hsapiens.UCSC.hg19, R.utils, cummeRbund, BSgenome.Mmusculus.UCSC.mm9, BSgenome.Rnorvegicus.UCSC.rn4, DESeq2, GenomicAlignments, BiocParallel, KEGG.db, miRNApath, miRNAtap, miRNAtap.db
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Package Source oneChannelGUI_1.34.0.tar.gz
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Mac OS X 10.6 (Snow Leopard) oneChannelGUI_1.34.0.tgz
Mac OS X 10.9 (Mavericks) oneChannelGUI_1.34.0.tgz
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