To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ontoCAT")

In most cases, you don't need to download the package archive at all.

ontoCAT

Ontology traversal and search

Bioconductor version: Release (3.0)

The ontoCAT R package provides a simple interface to ontologies described in widely used standard formats, stored locally in the filesystem or accessible online. The full version of ontoCAT R package also supports searching for ontology terms across multiple ontologies and in major ontology repositories, as well as a number of advanced ontology navigation functions: www.ontocat.org/wiki/r

Author: Natalja Kurbatova, Tomasz Adamusiak, Pavel Kurnosov, Morris Swertz, Misha Kapushevsky

Maintainer: Natalja Kurbatova <natalja at ebi.ac.uk>

Citation (from within R, enter citation("ontoCAT")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ontoCAT")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ontoCAT")

 

PDF R Script ontoCAT package
PDF   Reference Manual
Text   LICENSE

Details

biocViews Classification, DataRepresentation, Software
Version 1.18.0
In Bioconductor since BioC 2.7 (R-2.12)
License Apache License 2.0
Depends rJava, methods
Imports
Suggests
SystemRequirements
URL
Depends On Me
Imports Me
Suggests Me RMassBank

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ontoCAT_1.18.0.tar.gz
Windows Binary ontoCAT_1.18.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ontoCAT_1.18.0.tgz
Mac OS X 10.9 (Mavericks) ontoCAT_1.18.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center