To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ontoCAT")

In most cases, you don't need to download the package archive at all.

ontoCAT

Ontology traversal and search

Bioconductor version: Release (3.0)

The ontoCAT R package provides a simple interface to ontologies described in widely used standard formats, stored locally in the filesystem or accessible online. The full version of ontoCAT R package also supports searching for ontology terms across multiple ontologies and in major ontology repositories, as well as a number of advanced ontology navigation functions: www.ontocat.org/wiki/r

Author: Natalja Kurbatova, Tomasz Adamusiak, Pavel Kurnosov, Morris Swertz, Misha Kapushevsky

Maintainer: Natalja Kurbatova <natalja at ebi.ac.uk>

Citation (from within R, enter citation("ontoCAT")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ontoCAT")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ontoCAT")

 

PDF R Script ontoCAT package
PDF   Reference Manual
Text   LICENSE

Details

biocViews Classification, DataRepresentation, Software
Version 1.18.0
In Bioconductor since BioC 2.7 (R-2.12)
License Apache License 2.0
Depends rJava, methods
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me RMassBank

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ontoCAT_1.18.0.tar.gz
Windows Binary ontoCAT_1.18.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ontoCAT_1.18.0.tgz
Mac OS X 10.9 (Mavericks) ontoCAT_1.18.0.tgz
Browse/checkout source (username/password: readonly)
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