pcot2

Principal Coordinates and Hotelling's T-Square method

PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.

Author	Sarah Song, Mik Black
Maintainer	Sarah Song

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pcot2")

Documentation

HowToUseGeneLocator.pdf	PDF
PCOT2 Vignette	PDF	R Script
Reference Manual

Details

biocViews	Microarray , DifferentialExpression
Depends	R , grDevices , Biobase , amap
Imports
Suggests	multtest , hu6800.db , KEGG.db , mvtnorm
System Requirements
License	GPL (>= 2)
URL
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Package Downloads

Package source	pcot2_1.16.0.tar.gz
Windows 32-bit binary	pcot2_1.16.0.zip
Windows 64-bit binary	pcot2_1.16.0.zip
MacOS X 10.5 (Leopard) binary	pcot2_1.16.0.tgz
Package Downloads Report	Downloads Stats