To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("pdmclass")

In most cases, you don't need to download the package archive at all.

pdmclass

Classification of Microarray Samples using Penalized Discriminant Methods

Bioconductor version: Release (3.0)

This package can be used to classify microarray data using one of three penalized regression methods; partial least squares, principal components regression, or ridge regression.

Author: James W. MacDonald, Debashis Ghosh, based in part on pls code of Mike Denham

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("pdmclass")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("pdmclass")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pdmclass")

 

PDF R Script pdmclass Overview
PDF   Reference Manual

Details

biocViews Classification, Software
Version 1.38.0
In Bioconductor since BioC 1.7 (R-2.2)
License Artistic-2.0
Depends Biobase(>= 1.4.22), R (>= 1.9.0), fibroEset, mda
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me oneChannelGUI

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source pdmclass_1.38.0.tar.gz
Windows Binary pdmclass_1.38.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) pdmclass_1.38.0.tgz
Mac OS X 10.9 (Mavericks) pdmclass_1.38.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center