To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("polyester")

In most cases, you don't need to download the package archive at all.

polyester

 

   

Simulate RNA-seq reads

Bioconductor version: Release (3.4)

This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.

Author: Alyssa C. Frazee, Andrew E. Jaffe, Rory Kirchner, Jeffrey T. Leek

Maintainer: Jack Fu <jmfu at jhsph.edu>, Jeff Leek <jtleek at gmail.com>

Citation (from within R, enter citation("polyester")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("polyester")

Documentation

HTML R Script The Polyester package for simulating RNA-seq reads
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, Sequencing, Software
Version 1.10.0
In Bioconductor since BioC 3.0 (R-3.1) (2.5 years)
License Artistic-2.0
Depends R (>= 3.0.0)
Imports Biostrings(>= 2.32.0), IRanges, S4Vectors, logspline, limma, zlibbioc
LinkingTo
Suggests knitr, ballgown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source polyester_1.10.0.tar.gz
Windows Binary polyester_1.10.0.zip
Mac OS X 10.9 (Mavericks) polyester_1.10.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/polyester/tree/release-3.4
Package Short Url http://bioconductor.org/packages/polyester/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: