prada

Data analysis for cell-based functional assays

Bioconductor version: Release (2.14)

Tools for analysing and navigating data from high-throughput phenotyping experiments based on cellular assays and fluorescent detection (flow cytometry (FACS), high-content screening microscopy).

Author: Florian Hahne <florian.hahne at novartis.com>, Wolfgang Huber <huber at ebi.ac.uk>, Markus Ruschhaupt, Joern Toedling <toedling at ebi.ac.uk>, Joseph Barry <joseph.barry at embl.de>

Maintainer: Florian Hahne <florian.hahne at novartis.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("prada")

To cite this package in a publication, start R and enter:

    citation("prada")

Documentation

PDF R Script Combining prada output and cellHTS
PDF R Script Removal of contaminants from FACS data
PDF   Reference Manual

Details

biocViews CellBasedAssays, Software, Visualization
Version 1.40.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License LGPL
Depends R (>= 2.10), Biobase, RColorBrewer, grid, methods, rrcov
Imports Biobase, BiocGenerics, graphics, grDevices, grid, MASS, methods, RColorBrewer, rrcov, stats4, utils
Suggests cellHTS, tcltk
System Requirements
URL
Depends On Me cellHTS, domainsignatures, facsDorit, RNAither
Imports Me cellHTS2
Suggests Me

Package Downloads

Package Source prada_1.40.0.tar.gz
Windows Binary prada_1.40.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) prada_1.40.0.tgz
Mac OS X 10.9 (Mavericks)
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