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Parses BioPax files and represents them in R

Bioconductor version: Release (2.14)

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <dev at>

To install this package, start R and enter:

Citation (from within R, enter citation("rBiopaxParser")):




To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script rBiopaxParser Vignette
PDF   Reference Manual
Text   NEWS


biocViews DataRepresentation, Software
Version 2.2.0
In Bioconductor since BioC 2.12 (R-3.0)
License GPL (>= 2)
Depends R (>= 3.0.0), data.table
Imports XML
Suggests Rgraphviz, RCurl, graph, RUnit, BiocGenerics, nem, RBGL
System Requirements
Depends On Me
Imports Me
Suggests Me NetPathMiner

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source rBiopaxParser_2.2.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) rBiopaxParser_2.2.0.tgz
Mac OS X 10.9 (Mavericks) rBiopaxParser_2.2.0.tgz
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