To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rBiopaxParser")

In most cases, you don't need to download the package archive at all.

rBiopaxParser

Parses BioPax files and represents them in R

Bioconductor version: Release (2.14)

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <dev at frankkramer.de>

Citation (from within R, enter citation("rBiopaxParser")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rBiopaxParser")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rBiopaxParser")

 

PDF R Script rBiopaxParser Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, Software
Version 2.2.0
In Bioconductor since BioC 2.12 (R-3.0)
License GPL (>= 2)
Depends R (>= 3.0.0), data.table
Imports XML
Suggests Rgraphviz, RCurl, graph, RUnit, BiocGenerics, nem, RBGL
System Requirements
URL https://github.com/frankkramer/rBiopaxParser
Depends On Me
Imports Me
Suggests Me NetPathMiner

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source rBiopaxParser_2.2.0.tar.gz
Windows Binary rBiopaxParser_2.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) rBiopaxParser_2.2.0.tgz
Mac OS X 10.9 (Mavericks) rBiopaxParser_2.2.0.tgz
Browse/checkout source (username/password: readonly)
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