To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rSFFreader")

In most cases, you don't need to download the package archive at all.

rSFFreader

rSFFreader reads in sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers

Bioconductor version: Release (2.14)

rSFFreader reads sequence, qualities and clip point values from sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers. The plan is to also write out sff files and to read in flowgrams with some utils

Author: Matt Settles <msettles at uidaho.edu>, Sam Hunter, Brice Sarver, Ilia Zhbannikov, Kyu-Chul Cho

Maintainer: Matt Settles <msettles at uidaho.edu>

Citation (from within R, enter citation("rSFFreader")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rSFFreader")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rSFFreader")

 

PDF R Script An introduction to rSFFreader
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Sequencing, Software
Version 0.12.0
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0
Depends R (>= 2.13.0), BiocGenerics, IRanges(>= 1.21.10), XVector(>= 0.3.2), Biostrings(>= 2.31.3), GenomicRanges, ShortRead(>= 1.15.9), xtable, methods
Imports methods, IRanges, XVector, Biostrings, ShortRead, GenomicRanges, Biobase
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source rSFFreader_0.12.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard) rSFFreader_0.12.0.tgz
Mac OS X 10.9 (Mavericks) rSFFreader_0.12.0.tgz
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