To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rTRM")

In most cases, you don't need to download the package archive at all.

rTRM

Identification of transcriptional regulatory modules from PPI networks

Bioconductor version: Release (2.14)

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("rTRM")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rTRM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRM")

 

PDF R Script Introduction to rTRM
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 2.10), igraph (>= 0.7), RSQLite
Imports AnnotationDbi
Suggests RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, knitr, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2
System Requirements
URL
Depends On Me
Imports Me rTRMui
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source rTRM_1.2.0.tar.gz
Windows Binary rTRM_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) rTRM_1.2.0.tgz
Mac OS X 10.9 (Mavericks) rTRM_1.2.0.tgz
Browse/checkout source (username/password: readonly)
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