To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("sangerseqR")

In most cases, you don't need to download the package archive at all.

sangerseqR

 

Tools for Sanger Sequencing Data in R

Bioconductor version: Release (3.1)

This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.

Author: Jonathon T. Hill, Bradley Demarest

Maintainer: Jonathon Hill <jhill at genetics.utah.edu>

Citation (from within R, enter citation("sangerseqR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("sangerseqR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sangerseqR")

 

PDF R Script sangerseqR
PDF   Reference Manual

Details

biocViews SNP, Sequencing, Software, Visualization
Version 1.4.0
In Bioconductor since BioC 2.14 (R-3.1) (1 years)
License GPL-2
Depends R (>= 3.0.2), Biostrings
Imports methods, shiny
LinkingTo
Suggests BiocStyle, knitr, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source sangerseqR_1.4.0.tar.gz
Windows Binary sangerseqR_1.4.0.zip
Mac OS X 10.6 (Snow Leopard) sangerseqR_1.4.0.tgz
Mac OS X 10.9 (Mavericks) sangerseqR_1.4.0.tgz
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