To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("savR")

In most cases, you don't need to download the package archive at all.

savR

Parse and analyze Illumina SAV files

Bioconductor version: Release (2.14)

Parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.

Author: R. Brent Calder

Maintainer: R. Brent Calder <brent.calder at einstein.yu.edu>

Citation (from within R, enter citation("savR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("savR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("savR")

 

PDF R Script Using savR
PDF   Reference Manual

Details

biocViews Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 2.14 (R-3.1)
License AGPL-3
Depends ggplot2
Imports methods, reshape2, scales, gridExtra, XML
Suggests Cairo
System Requirements
URL https://github.com/bcalder/savR
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source savR_1.2.0.tar.gz
Windows Binary savR_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) savR_1.2.0.tgz
Mac OS X 10.9 (Mavericks) savR_1.2.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center