To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("scsR")

In most cases, you don't need to download the package archive at all.

scsR

SiRNA correction for seed mediated off-target effect

Bioconductor version: Release (3.0)

Corrects genome-wide siRNA screens for seed mediated off-target effect. Suitable functions to identify the effective seeds/miRNAs and to visualize their effect are also provided in the package.

Author: Andrea Franceschini

Maintainer: Andrea Franceschini <andrea.franceschini at isb-sib.ch>, Roger Meier <roger.meier at lmsc.ethz.ch>, Christian von Mering <mering at imls.uzh.ch>

Citation (from within R, enter citation("scsR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("scsR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scsR")

 

PDF R Script scsR Vignette
PDF   Reference Manual

Details

biocViews Preprocessing, Software
Version 1.3.2
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-2
Depends R (>= 2.14.0), STRINGdb, methods, BiocGenerics, Biostrings, IRanges, plyr, tcltk
Imports sqldf, hash, ggplot2, graphics, grDevices, RColorBrewer
Suggests RUnit
SystemRequirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source scsR_1.3.2.tar.gz
Windows Binary scsR_1.3.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) scsR_1.3.2.tgz
Mac OS X 10.9 (Mavericks) scsR_1.3.2.tgz
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