scsR

SiRNA correction for seed mediated off-target effect

Bioconductor version: Release (2.14)

Corrects genome-wide siRNA screens for seed mediated off-target effect. Suitable functions to identify the effective seeds/miRNAs and to visualize their effect are also provided in the package.

Author: Andrea Franceschini

Maintainer: Andrea Franceschini <andrea.franceschini at isb-sib.ch>, Roger Meier <roger.meier at lmsc.ethz.ch>, Christian von Mering <mering at imls.uzh.ch>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("scsR")

Citation (from within R, enter citation("scsR")):

Documentation

PDF R Script scsR Vignette
PDF   Reference Manual

Details

biocViews Preprocessing, Software
Version 1.0.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-2
Depends R (>= 2.14.0), methods, BiocGenerics, Biostrings, IRanges, plyr, STRINGdb, tcltk
Imports sqldf, hash, ggplot2, graphics, grDevices, RColorBrewer
Suggests RUnit
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source scsR_1.0.0.tar.gz
Windows Binary scsR_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) scsR_1.0.0.tgz
Mac OS X 10.9 (Mavericks) scsR_1.0.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center