To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("scsR")

In most cases, you don't need to download the package archive at all.

scsR

SiRNA correction for seed mediated off-target effect

Bioconductor version: Release (3.0)

Corrects genome-wide siRNA screens for seed mediated off-target effect. Suitable functions to identify the effective seeds/miRNAs and to visualize their effect are also provided in the package.

Author: Andrea Franceschini

Maintainer: Andrea Franceschini <andrea.franceschini at isb-sib.ch>, Roger Meier <roger.meier at lmsc.ethz.ch>, Christian von Mering <mering at imls.uzh.ch>

Citation (from within R, enter citation("scsR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("scsR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scsR")

 

PDF R Script scsR Vignette
PDF   Reference Manual

Details

biocViews Preprocessing, Software
Version 1.2.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-2
Depends R (>= 2.14.0), methods, BiocGenerics, Biostrings, IRanges, plyr, STRINGdb, tcltk
Imports sqldf, hash, ggplot2, graphics, grDevices, RColorBrewer
Suggests RUnit
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source scsR_1.2.0.tar.gz
Windows Binary scsR_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) scsR_1.2.0.tgz
Mac OS X 10.9 (Mavericks) scsR_1.2.0.tgz
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