To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("shinyTANDEM")

In most cases, you don't need to download the package archive at all.

shinyTANDEM

Provides a GUI for rTANDEM

Bioconductor version: Release (3.0)

This package provides a GUI interface for rTANDEM. The GUI is primarily designed to visualize rTANDEM result object or result xml files. But it will also provides an interface for creating parameter objects, launching searches or performing conversions between R objects and xml files.

Author: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>

Maintainer: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>

Citation (from within R, enter citation("shinyTANDEM")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("shinyTANDEM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shinyTANDEM")

 

PDF R Script shinyTANDEM user guide
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews MassSpectrometry, Proteomics, Software
Version 1.4.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends rTANDEM(>= 1.3.5), shiny, mixtools, methods, xtable
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source shinyTANDEM_1.4.0.tar.gz
Windows Binary shinyTANDEM_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) shinyTANDEM_1.4.0.tgz
Mac OS X 10.9 (Mavericks) shinyTANDEM_1.4.0.tgz
Browse/checkout source (username/password: readonly)
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